PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038867m
Common NameCISIN_1g038867mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 722aa    MW: 80124.6 Da    PI: 6.5477
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038867mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-20576674295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++    ++ks++y+l+ ++ +FvkangL+egDf+v++  +
  orange1.1g038867m 576 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYSFrfwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIY--S 664
                        79*************************999999********7778*******9999988888888888.********************..5 PP

                        S.SEE..EEE CS
                 B3  87 r.sefelvvk 95 
                        + ++++++++
  orange1.1g038867m 665 DvKCGKYLIR 674
                        5599988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-27570684IPR015300DNA-binding pseudobarrel domain
CDDcd100156.32E-36573676No hitNo description
SuperFamilySSF1019361.49E-21574670IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.503575679IPR003340B3 DNA binding domain
SMARTSM010192.5E-16575679IPR003340B3 DNA binding domain
PfamPF023622.0E-16576673IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MKNLQLHGED LHARSKIEAN NHTGFQAMTE EQVTGAGAER EIYMQDDLLD VDDASIFYAD  60
FPPLPDFPCM SSSSSSSSTP AAVKAITSSA SSSSASSSSS AASWAVLRSD AEEDVDKKNH  120
QDQSGDAATQ PALSSTASMD ISQATDTSID GVGVDCMDVM ENFVFMDLLD NNDLFDPSSI  180
FNQDDSQPFE GYQQQQQQNQ TQHEHRQQER DQELMMQSNN GDNSNEDGGA SDDLAMVFLE  240
WLKSNKETVS AEDLRNVKIK KSTIECAAKR LGGGKEAMKQ LLKLILEWVQ TNHLQKRRMR  300
EALLPASNNN NNLPYQQHFQ DTFQNPNPNP NPNHNCNPIP PEPNPCFAQS SWIGQPSFIH  360
DPATMVTGFP TPAVGYMGDS FANGMSNING HGYAAPPSEY HMLETTRSWP NSQFGLASNY  420
NSFSDNNLHP APLHPQAFTG YGNQYPYPYL PGHGEQRLMR MGSSATKEAR KKRMARQRRL  480
STHPRHQHHH NNQQNQLQGQ NADQHARFGS DNCNPAAQAN SGNWVFWPAS AGGPAAVSPL  540
SPVDRQPMQP QNYQRQPASD RRQGWKPEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH  600
LPELEARDGI SIAMEDIGTS RVWNMRYSFR FWPNNKSRMY LLENTGDFVK ANGLQEGDFI  660
VIYSDVKCGK YLIRGVKVRQ PGPKSETKRT GKSQRNQHAN PPSAAMGNGS SSSLQVPQTV  720
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.86330.0callus
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443663.10.0hypothetical protein CICLE_v10019039mg
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLA0A067FES80.0A0A067FES8_CITSI; Uncharacterized protein
STRINGPOPTR_0002s25330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-155B3 family protein